Changelog
EnrichGT 0.2.9
Package major update
infering_regulator_act()
to infer pathway or transcript factors activity from EnrichGT meta-gene modules.This will be the end of new functions of
EnrichGT
package.
EnrichGT 0.2.8.x
Package major update
EnrichGT()
now supports changinghclust()
methods, like using ward.D, ward.D2, average …EnrichGT_obj
now contains a slotclustering_tree
containg the cluster treehclust
object, for further analysing and drawing figures.EnrichGT_obj
now contains raw table. (0.2.8.5)
EnrichGT 0.2.5
Package major update
Bug fix
EnrichGT()
supports a list containing multiple source enrichment results (e.g., GO and KEGG enrichment for a same DEG list), and fusing them. User can gain Metascape like multi-DB enrichment result by using the fusing function (See Articles).
EnrichGT 0.2.0
EnrichGT 0.1.7
Package major update
add
BuildMultigroupDEGlist()
andRanked.GS()
for simplifying procedure of multi-group enrichment andGSEA
.
EnrichGT 0.1.2
Package major update
Support GSEA results.
Give up
ggplot2
figures ingt
object for speed up. Though the result is much ugly than before :)Intelligent sensing the cluster numbers.
Provide self-check of column names, if
setReadable()
before, etc.