ORA KEGG analysis by clusterProfiler by symbol identifiers.
Usage
doKEGG(GS, PVal = 0.01, QVal = 0.05, Organism = "hsa", OrgDB = org.Hs.eg.db)
Arguments
- GS
Gene Symbols for enrichment analysis. NOT ENSEMBL ID.
- PVal
P adjusted value cut off, default 0.01
- QVal
qvalue cut off, default 0.05
- Organism
supported organism listed in 'https://www.genome.jp/kegg/catalog/org_list.html'
- OrgDB
default as org.Hs.eg.db
Value
An enrichment result generated by clusterProfiler.